| District | City | School Name | Management Organization | Accolades | Year Opened |
| Alachua County Public Schools | Alachua | Alachua Learning Center, Inc. | Made AYP | 1999 | |
| Alachua County Public Schools | Gainesville | Caring and Sharing Learning School, Inc. | Made AYP | 1998 | |
| Alachua County Public Schools | Gainesville | Einstein Montessori School, Inc. | Did Not Make AYP | 1999 | |
| Alachua County Public Schools | Gainesville | Expressions Learning Arts Academy | Made AYP | 1999 | |
| Alachua County Public Schools | Gainesville | Florida SIA Tech at Gainesville, Inc. | 2003 | ||
| Alachua County Public Schools | Gainesville | Genesis Preparatory School | 2000 | ||
| Alachua County Public Schools | Gainesville | Healthy Learning Academy | 2006 | ||
| Alachua County Public Schools | Gainesville | Hoggetowne Middle School | Did Not Make AYP | 2003 | |
| Alachua County Public Schools | Micanopy | Micanopy Area Cooperative School | Made AYP | 1997 | |
| Alachua County Public Schools | Micanopy | Micanopy Middle School | Did Not Make AYP | 2002 | |
| Alachua County Public Schools | Gainesville | One Room School House Project, Inc. | Made AYP | 1997 | |
| Alachua County Public Schools | Gainesville | Sweetwater Branch Academy | Did Not Make AYP | 2008 |