| District | City | School Name | Management Organization | Accolades | Year Opened |
| Chester County School District | Chester | Academy for Teaching and Learning | Made AYP | 2006 | |
| Aiken County Public School District | Aiken | Aiken Performing Arts Charter | Did Not Make AYP | 2005 | |
| Greenville County School District | Simpsonville | Brashier Middle College | Made AYP | 2006 | |
| Horry County Schools | Myrtle Beach | Bridgewater Academy Charter | Made AYP | 2003 | |
| Abbeville County School District | Calhoun Falls | Calhoun Falls Charter School | Made AYP | 2008 | |
| Richland County School District One | Columbia | Carolina School for Inquiry | Made AYP | 2006 | |
| Charleston County School District | Charleston | Charleston Charter School for Math and Science | Made AYP | 2008 | |
| Charleston County School District | Charleston | Charleston Development Academy | Made AYP | 2003 | |
| Rock Hill School District Three | Rock Hill | Children's Attention Home | Did Not Make AYP | 2004 | |
| Darlington County School District | Florence | CHOiCES | Made AYP | 2002 | |
| Lancaster County School District | Lancaster | Discovery School of Lancaster County | Made AYP | 2000 | |
| Charleston County School District | Mount Pleasant | East Cooper Montessori Charter School | Made AYP | 2003 | |
| Edgefield County School District | North Augusta | Fox Creek High School | Made AYP | 2004 | |
| Greenville County School District | Greenville | Fuller Normal Advanced Technology Charter School | Did Not Make AYP | 2006 | |
| Greenville County School District | Greenville | Greenville Technical Charter High School | Made AYP | 1999 | |
| Greenville County School District | Taylors | Greer Middle College | Made AYP | 2008 | |
| Charleston County School District | North Charleston | Greg Mathis Charter High School (Youthbuild) | Did Not Make AYP | 2003 | |
| Charleston County School District | Charleston | James Island Charter High School | Made AYP | 2003 | |
| Greenville County School District | Greenville | Langston Charter Middle School | Made AYP | 2005 | |
| Aiken County Public School District | Aiken | Lloyd Kennedy Charter School | Did Not Make AYP | 2002 | |
| Lee County School District | Bishopville | Mary L. Dinkins Academy | Did Not Make AYP | 2005 | |
| Greenville County School District | Greenville | Meyer Center for Special Children | Did Not Make AYP | 1999 | |
| Aiken County Public School District | Graniteville | Midland Valley Preparatory School | Made AYP | 2002 | |
| Richland County School District One | Columbia | Midlands Math and Business Academy | Made AYP | 2004 | |
| Charleston County School District | Charleston | Orange Grove Elementary Charter School | Made AYP | 2006 | |
| Columbia | Palmetto State E-cademy | Insight Schools | Made AYP | 2008 | |
| Florence School District One | Florence | Palmetto Youth Academy | Made AYP | 2005 | |
| Clarendon School District 2 | Alcolu | Phoenix Charter High School | Did Not Make AYP | 1999 | |
| Richland County School District One | Columbia | Richland One Middle College | Made AYP | 2004 | |
| Charleston County School District | Johns Island | Sea Island Youthbuild | Made AYP | 2007 | |
| Columbia | South Carolina Connections Academy | Connections Academy | Made AYP | 2008 | |
| Columbia | South Carolina Virtual Charter School | K12 Inc. | Made AYP | 2008 | |
| Charleston County School District | North Charleston | Susan G. Boykin Academy | Did Not Make AYP | 2005 | |
| Greenville County School District | Travelers Rest | Wohali Academy | Made AYP | 2004 | |
| Clarendon School District One | Summerton | Young Entrepreneurial Vocational Academy (YEVA) | Made AYP | 2008 | |
| Williamsburg County Schools | Kingstree | Youth Academy Charter School | Did Not Make AYP | 1999 |