| District | City | School Name | Management Organization | Accolades | Year Opened |
| Merrimack School District | Merrimack | Academy for Science and Design (H) | Made AYP | 2007 | |
| Merrimack School District | Merrimack | Academy for Science and Design (M) | Made AYP | 2007 | |
| Dover, New Hampshire School District | Dover | Cocheco Arts & Technology Academy | Made AYP | 2005 | |
| Merrimack Valley School District | Penacook | CSI Charter School | Made AYP | 2007 | |
| Exeter | Great Bay eLearning Charter School (H) | Made AYP | 2005 | ||
| Exeter | Great Bay eLearning Charter School (M) | Made AYP | 2008 | ||
| Lebanon School District | Lebanon | Ledyard Charter Academy | Made AYP | 2009 | |
| Rochester School Department | Rochester | New Hampshire Equestrian Academy Charter School | Did Not Make AYP | 2006 | |
| Littleton School District | Littleton | North Country Charter Academy | Did Not Make AYP | 2004 | |
| Littleton School District | Littleton | North Country Charter Academy (M) | Made AYP | 2004 | |
| Sanborn Regional School District | Kingston | Seacoast Charter School | Made AYP | 2004 | |
| Pembroke School District | Pembroke | Strong Foundations Charter School | Made AYP | 2007 | |
| Monadnock Regional School District | Surry | Surry Village School Charter School | Made AYP | 2006 | |
| Exeter | Virtual Learning Academy | Made AYP | 2008 |