| District | City | School Name | Management Organization | Accolades | Year Opened |
| Pocatello/Chubbuck School District No. 25 | Pocatello | Academy at Roosevelt Center (ARC) | Made AYP | 2006 | |
| Independent School District Of Boise City | Boise | ANSER Charter School | Made AYP | 1999 | |
| Minidoka County Joint School District No. 331 | Twin Falls | ARTEC Charter School | 2006 | ||
| Blackfoot School District #55 | Blackfoot | Blackfoot Charter Community Learning Center | 2000 | ||
| Coeur D'Alene School District | Coeur D'Alene | Coeur D'Alene Charter Academy | Made AYP, US/News World Report America’s Best High Schools | 1999 | |
| Joint School District No. 2 | Meridian | Compass Public Charter School | Made AYP | 2005 | |
| Kuna School District | Kuna | Falcon Ridge Public Charter School | Made AYP | 2005 | |
| Joint School District No. 2 | Boise | Garden City Community School | Did Not Make AYP | 2006 | |
| Nampa School District | Nampa | Idaho Arts Charter School | Made AYP | 2005 | |
| Deary | Idaho Distance Education Academy | Did Not Make AYP | 2004 | ||
| Snake River School District | Blackfoot | Idaho Science and Technology Charter School | Did Not Make AYP | 2009 | |
| Meridian | Idaho Virtual Academy | K12 Inc. | Did Not Make AYP | 2004 | |
| Boise | Inspire Academics, Inc. | Connections Academy | 2005 | ||
| Boise | iSucceed Virtual High School | Insight Schools | Did Not Make AYP | 2008 | |
| Boise | Kaplan Academy of Idaho | Made AYP | 2009 | ||
| Coeur d' Alene | Kootenai Bridge Academy | 2009 | |||
| Nampa School District | Nampa | Liberty Charter School | Made AYP | 2005 | |
| Joint School District No. 2 | Meridian | Meridian Medical Arts Charter High School | Made AYP | 2003 | |
| Joint School District No. 2 | Meridian | Meridian Technical Charter High School | 1999 | ||
| Moscow School District | Moscow | Moscow Charter School | Made AYP | 1998 | |
| Nampa School District | Nampa | Nampa Classical Academy | Did Not Make AYP | 2009 | |
| Joint School District No. 2 | Eagle | North Star Charter School | 2003 | ||
| Gooding Joint School District | Gooding | North Valley Academy | Made AYP | 2008 | |
| Moscow School District | Moscow | Palouse Prairie School | Made AYP | 2009 | |
| Pocatello/Chubbuck School District No. 25 | Pocatello | Pocatello Community Charter School | Made AYP | 1999 | |
| Mountain Home | Richard Mckenna Charter High School | Did Not Make AYP | 2004 | ||
| Independent School District Of Boise City | Boise | Rolling Hills Public Charter School | Made AYP | 2005 | |
| Lake Pend Oreille Schoold District No. 84 | Sandpoint | Sandpoint Charter School | Did Not Make AYP | 2001 | |
| Twin Falls School District | Idaho Falls | Taylor's Crossing Public Charter School | Made AYP | 2006 | |
| Vallivue School District #139 | Caldwell | Thomas Jefferson Charter School | Made AYP | 2004 | |
| Salmon School District #291 | Carmen | Upper Carmen Public Charter School | Made AYP | 2005 | |
| Nampa School District | Nampa | Victory Charter School | Made AYP | 2004 | |
| Vallivue School District #139 | Caldwell | Vision Charter School | Made AYP | 2007 | |
| Bonneville Joint School District No. 93 | Ammon | White Pine Charter School | Made AYP | 2003 | |
| Twin Falls School District | Twin Falls | Wings Charter Middle School | Did Not Make AYP | 2009 | |
| Twin Falls School District | Twin Falls | Xavier Charter School | Made AYP | 2007 |