| District | City | School Name | Management Organization | Accolades | Year Opened |
| Santa Fe Public Schools | Santa Fe | Academy for Technology and the Classics | Did Not Make AYP | 2001 | |
| Albuquerque Public Schools | Albuquerque | Academy of Trades and Technology | Did Not Make AYP | 2005 | |
| Albuquerque Public Schools | Albuquerque | Albuquerque Institute of Math & Science | Made AYP | 2005 | |
| Silver City Consolidated Schools | Silver City | Aldo Leopold Charter School | Did Not Make AYP | 2005 | |
| Albuquerque Public Schools | Albuquerque | Alice King Community | Made AYP | 2006 | |
| Las Cruces Public School District | Las Cruces | Alma D'Arte Charter High | 2004 | ||
| Albuquerque Public Schools | Albuquerque | Amy Biehl Charter High | Did Not Make AYP | 2000 | |
| Taos Municipal Schools | El Prado | Anansi Charter School | Made AYP | 2001 | |
| Gadsden Independent School District | Anthony | Anthony Charter School | 2009 | ||
| Albuquerque Public Schools | Albuquerque | Bataan Military Academy | Did Not Make AYP | 2007 | |
| Albuquerque Public Schools | Albuquerque | Career Academic Technical Academy | Did Not Make AYP | 2007 | |
| Espa�ola Public School District | San Juan Pueblo | Carinos De Los Ninos | Made AYP | 2006 | |
| Albuquerque Public Schools | Albuquerque | Cesar Chavez Community School | 2004 | ||
| Albuquerque Public Schools | Albuquerque | Christine Duncan's Heritage Academy | Did Not Make AYP | 2006 | |
| Albuquerque Public Schools | Albuquerque | Cien Aguas International School | 2009 | ||
| Albuquerque Public Schools | Albuquerque | Corrales International School | Made AYP | 2008 | |
| Albuquerque Public Schools | Los Ranchos De Albuquerque | Cottonwood Classical Preparatory | 2008 | ||
| Socorro Consolidated Schools | Socorro | Cottonwood Valley Charter School | Made AYP | 2001 | |
| Albuquerque | Creative Education Prep Institute #1 | 2004 | |||
| Deming Public School District | Deming | Deming Cesar Chavez Charter High | Did Not Make AYP | 2006 | |
| Albuquerque | Digital Arts and Technology Academy | Did Not Make AYP | 2002 | ||
| Bernalillo Public Schools | Sandia Park | East Mountain High School | Made AYP | 2000 | |
| Albuquerque Public Schools | Albuquerque | El Camino Real Charter | Did Not Make AYP | 2002 | |
| Albuquerque | Gilbert L. Sena Charter High School | 2004 | |||
| Albuquerque Public Schools | Albuquerque | Gordon Bernell Charter School | Did Not Make AYP | 2008 | |
| Albuquerque Public Schools | Albuquerque | Horizon Academy West | Did Not Make AYP | 2003 | |
| Albuquerque Public Schools | Albuquerque | International School at Mesa del Sol | 2009 | ||
| Carlsbad Municipal Schools | Carlsbad | Jefferson Montessori Academy | Did Not Make AYP | 2002 | |
| Albuquerque Public Schools | Albuquerque | La Academia De Esperanza | Did Not Make AYP | 2003 | |
| Albuquerque Public Schools | Albuquerque | La Academia De Lengua Y Cultura | Made AYP | 2003 | |
| Las Cruces Public School District | Las Cruces | La Academia Dolores Huerta | Did Not Make AYP | 2004 | |
| Albuquerque Public Schools | Albuquerque | La Promesa Early Learning Center | Did Not Make AYP | 2005 | |
| Albuquerque Public Schools | Albuquerque | La Resolana Learning Academy | Did Not Make AYP | 2006 | |
| Las Cruces | Las Montanas Charter School | Made AYP | 2007 | ||
| Jemez Mountain Public Schools | Lindrith | Lindrith Area Heritage Charter School | Made AYP | 2007 | |
| Albuquerque Public Schools | Albuquerque | Los Puentes Charter School | Did Not Make AYP | 2002 | |
| Albuquerque Public Schools | Albuquerque | Media Arts Collaborative Charter School | 2008 | ||
| Gallup-Mckinley County Schools | Gallup | Middle College High School | Made AYP | 2002 | |
| Santa Fe Public Schools | Santa Fe | Monte Del Sol Charter School | Did Not Make AYP | 2000 | |
| Albuquerque Public Schools | Albuquerque | Montessori Elementary School | Made AYP | 2005 | |
| Albuquerque Public Schools | Albuquerque | Montessori of the Rio Grande | 2004 | ||
| Cimarron Municipal Schools | Angel Fire | Moreno Valley High School | Made AYP | 2002 | |
| Aztec Municipal School District | Aztec | Mosaic Academy Charter | Did Not Make AYP | 2006 | |
| Albuquerque Public Schools | Albuquerque | Mountain Mahogany Community School | Did Not Make AYP | 2005 | |
| Albuquerque Public Schools | Albuquerque | Native American Community Academy | Did Not Make AYP | 2006 | |
| Albuquerque | New America School | 2009 | |||
| Albuquerque Public Schools | Los Ranchos De Albuquerque | North Valley Academy | Did Not Make AYP | 2008 | |
| Albuquerque Public Schools | Albuquerque | Nuestros Valores Charter School | Did Not Make AYP | 2001 | |
| Albuquerque Public Schools | Albuquerque | Public Academy for Performing Arts | Made AYP | 2001 | |
| Albuquerque Public Schools | Albuquerque | Ralph J. Bunche Academy | Made AYP | 2006 |