| District | City | School Name | Management Organization | Accolades | Year Opened |
| Duncanville ISD | Dallas | A W Brown - Fellowship Charter School | Rylie Family Faith Academy | Made AYP | 1999 |
| Dallas Independent School District | Dallas | A W Brown - Fellowship North Campus | Rylie Family Faith Academy | 1998 | |
| Dallas Independent School District | Dallas | A+ Academy | Rylie Family Faith Academy | Made AYP | 2000 |
| Houston Independent School District | Houston | Academy of Accelerated Learning | Did Not Make AYP | 1998 | |
| Northside Independent School District | San Antonio | Academy of Careers and Technologies Charter School | Made AYP | 2001 | |
| Dallas Independent School District | Dallas | Academy of Dallas | Charter School Administrative Services | Did Not Make AYP | 1999 |
| Houston Independent School District | Houston | Accelerated Interdisciplinary Acad | Made AYP | 2004 | |
| Houston Independent School District | Houston | Accelerated Intermediate Charter School | 2001 | ||
| Corpus Christi Independent School District | Corpus Christi | Accelerated Learning Center | Gulf Coast Council of Laraza, Inc. | 1999 | |
| McAllen Independent School District | Mcallen | Achieve Early College H S | Made AYP | 2008 | |
| Houston | Advanced Virtual Academy | 2009 | |||
| Duncanville ISD | Dallas | Advantage Academy | Made AYP | 2001 | |
| Alief Independent School District | Houston | Alief Montessori Community School | Made AYP | 1998 | |
| East Central Independent School District | San Antonio | Alpha Academy | Jubilee Academic Center Inc. | Made AYP | 2003 |
| Garland Independent School District | Garland | Alpha Charter School | Did Not Make AYP | 2001 | |
| Galveston Independent School District | Galveston | Ambassadors Preparatory Academy | Made AYP | 2007 | |
| Austin Independent School District | Austin | American Youthworks Charter School | Did Not Make AYP | 1996 | |
| Austin Independent School District | Austin | American Youthworks Service Learning | Made AYP | 2003 | |
| Houston Independent School District | Houston | Amigos Por Vida-Friends for Life Charter School | Made AYP | 1999 | |
| Austin Independent School District | Austin | Annunciation Maternity Home | Made AYP | 2001 | |
| Arlington Independent School District | Arlington | Arlington Classics Academy | Made AYP | 1999 | |
| Waco Independent School District | Waco | Audre and Bernard Rapoport Academy | East Waco Innovative School Department, Inc. | Made AYP | 1998 |
| San Antonio Independent School District | San Antonio | Austin Academy | Made AYP | 2006 | |
| Austin Independent School District | Austin | Austin CAN! Academy Charter School | America CAN | Did Not Make AYP | 2002 |
| Manor Independent School District | Austin | Austin Discovery Sch | Made AYP | 2005 | |
| Chapel Hill Independent School District | Tyler | Azleway Charter School | Did Not Make AYP | 2001 | |
| Houston Independent School District | Bellaire | Baker-Ripley Charter School | Neighborhood Centers Inc. | 2008 | |
| Clear Creek Independent School District | El Lago | Bay Area Charter Elementary School | Bay Area Charter School, Inc. | Made AYP | 2000 |
| Clear Creek Independent School District | League City | Bay Area Charter Ms | Bay Area Charter School, Inc. | Made AYP | 2004 |
| East Central Independent School District | San Antonio | BCFS - Harlingen | 2008 | ||
| East Central Independent School District | San Antonio | BCFS - San Antonio | Jubilee Academic Center Inc. | 2008 | |
| Houston Independent School District | Houston | Beatrice Mayes Institute Charter School | Made AYP | 2001 | |
| Austin Independent School District | Austin | Benji's Special Educational Academy Charter School | Did Not Make AYP | 1999 | |
| San Antonio Independent School District | San Antonio | Bexar County Academy | Charter School Administrative Services | Made AYP | 1999 |
| Leakey ISD | Leakey | Big Springs Charter School | Made AYP | 2001 | |
| San Antonio Independent School District | San Antonio | Bonham Academy | Made AYP | 2006 | |
| Manor Independent School District | Austin | Boys and Girls Harbor Academy | Trinity Charter Schools | Made AYP | 2008 |
| Glen Rose ISD | Nemo | Brazos River Charter School | Did Not Make AYP | 2000 | |
| Bryan Independent School District | Bryan | Brazos School for Inquiry and Creativity (BSIC): Bryan/College | Democratic Schools Research Incorporated | Made AYP | 1999 |
| Houston Independent School District | Houston | Brazos School for Inquiry and Creativity (BSIC): Gano Street | Democratic Schools Research Incorporated | 2004 | |
| Cypress-Fairbanks Independent School District | Houston | Brazos School for Inquiry and Creativity (BSIC): Northwest | Democratic Schools Research Incorporated | Made AYP | 2004 |
| Houston Independent School District | Houston | Brazos School for Inquiry and Creativity (BSIC): Southwest | Democratic Schools Research Incorporated | Did Not Make AYP | 2005 |
| Houston Independent School District | Houston | Briarmeadow Charter | Made AYP | 2006 | |
| Wichita Falls Independent School District | Wichita Falls | Bright Ideas Charter | Connections Between Cultures, Inc. | Made AYP | 1998 |
| San Antonio Independent School District | San Antonio | Briscoe Academy | Made AYP | 2006 | |
| East Central Independent School District | San Antonio | Brooks Academy of Science and Engineering | Academica | Made AYP | 2006 |
| Bryan Independent School District | Bryan | Bryan Collegiate High School | Made AYP | 2007 | |
| Houston Independent School District | Houston | Burnett-Bayland Home | 1999 | ||
| Houston Independent School District | Houston | Burnett-Bayland Reception Center | Made AYP | 1999 | |
| Houston Independent School District | Houston | Cage El | Made AYP | 2006 |